Tag Archives: visualization

EuroVis 2010 [Weekly Head Voices #24]

Welcome all to the latest edition of the Weekly Head Voices!  In a bid to get more numbers into my titles (oh who am I kidding, I’m clearly trying to slightly injure or preferably frighten two birds with a single stone, splitting infinitives as I go along), this WHV is dedicated to the EuroVis 2010 conference, which on its part is the reason I spent most of last week in Bordeaux.

Château Faugères, youngest of the chateaux. Photo by Peter Krekel.

EuroVis is definitely the most important European scientific conference on Visualisation. For detailed and complete coverage, see T.J. Jankun-Kelly’s (he was also the uncontested tweetmaster of the conference) detailed blog posts on the first, second and third days of the conference. The post you are reading now is my very own extremely biased and mostly incomplete view of the conference and of conferences in general, which can sometimes be interesting.  Or just very misleading.

Let’s start with the basics: A scientific conference is where a bunch of mostly scientists get together somewhere in the world, ostensibly to present recent results of their research to each other. Work certainly gets presented, and in some cases it’s a treat seeing a gifted orator giving a superb presentation.

However, in my mind the primary reason to go to a conference is not to discuss work that was submitted half a year ago, but to meet with colleagues and friends and to discuss important things, such as life, science in general and the research that has not yet been published or even started up yet. It is a hugely important element of the social goo that keeps a research field coherent and cooperative.

There are numerous overlapping interest and social groups that continuously split off to discuss something or just socialise, and then merge back into the larger group. The various attendees each has their own character and associated mode of operation: Some flit around, speaking to all and sundry, some stick to and act as the backbone of the subgroup that they belong to, some walk around and think, sometimes being approach by yet another type of agent. It’s interesting to watch from the corner of one’s eye whilst one is also enjoying taking part in this system. Sometimes the backyard anthropologist in me wonders how exactly the nature of this social fabric affects the performance of science. I imagine that it would be cool to put together a taxonomy of social conference types and even map their behaviour during a single conference such as this.

In any case, at EuroVis there were, the same as last year in Berlin, 190 attendees.  Three days of presentations, with a poster session and a visit to Saint-Émilion thrown in for good measure.

With regard to the presentations, I seemed to notice an ever-so-slight upwards trend in the number of papers accompanied by open source software implementations (both MotionVA and ShapeSpaceExplorer by respectively our very own Peter Krekel and Stef Busking are open source, but there were more examples). This is really a great development, as it is an important component of the whole open science idea. With the implementations available, colleagues can reproduce one’s results and thus have a greater chance of being able to improve on them. Also, new implementations can be directly compared to existing ones, something which is currently incredibly hard.

Two of my favourite presentations were the following:

  • Visual Support for Interactive Post-Interventional Assessment of Radiofrequency Ablation Therapy by Christian Rieder, Andreas Weihusen, Christian Schumann, Stephan Zidowitz, Heinz-Otto Peitgen: I really like this genre of solutions, where complex 3D problems are reduced to normalised 2D representations. A previous example is the work of Neugebauer et al. at EuroVis 2009. In this case, the authors presented “tumor maps”, a 2D map-style representation of the tumor and its surroundings which greatly facilitates the post-therapy tumor assessment. The fulltext paper will hopefully be linked on Christian’s website soon.
  • Estimation and Modeling of Actual Numerical Errors in Volume Rendering by Joel Kronander, Jonas Unger, Anders Ynnerman, Torsten Möller: Although this is not my personal favourite type of research, I think the work (and work like it) is tremendously important. The authors meticulously measure the impact of different precision and sampling strategies on the volume rendering pipeline, and, as if that wasn’t enough, derive a mathematical model with which the role of these variables can be predicted in unseen volume rendering problems. In my view, this is a great example of research towards deriving elements of that elusive visualisation theory. Just to help ram the point home, the presentation was extremely well executed.

On a slightly higher level, what I’ve also started noticing is the different styles of visualisation.  Many research groups have a distinct style of visually representing their data: One can easily recognise a Viennese design, and sometimes even notice how elements thereof have been subtly adapted by a faction of ex-Viennese scientists in Bergen.  The Bergenesque style is still quite young, but will probably soon spread to different groups.  Of course not all groups are that easy: Our own style is heterogeneous, although I’m glad to see at least the blue-to-yellow more-or-less perceptually linear colour-scale starting to permeate our work. It would still be interesting to start a kind of genealogical tree showing the various styles and also how they spread along with the persons practising them.

On the topic of Saint-Émilion: 1000 vineyards covering 95% of the available land, oldest of the vineyards 2000 years old, number of beautiful old Chateaux (castles man, castles!) each having on average 6 hectares of land. 5 different classes of wine produceds, ranging from 5 euros per bottle (hello there!) up to 7000 euros per bottle. It’s a beautiful piece of country.  In fact, it reminded me very strongly of the Western Cape in South Africa,where I grew up.

My group ended up visiting Château Faugères, by far the youngest of the chateaux, but awesomely cool nonetheless, as it was designed by a Swiss-Italian architect by the awesomely cool name of Mario Botta. We got to taste one (1) wine. This was slightly less reminiscent of the vineyards of the Western Cape in South Africa, where one can taste wines until one starts developing very entertaining coordination problems. Fortunately, this very small oversight was more than compensated for by the subsequent visit to the town of Saint-Émilion, its monolithic church and the catacombs, all narrated by an extremely gifted and humorous guide, and finally by the marvelous concluding dinner, done as only the French can.

So kids, that it was it for this week’s lecture on Further Mystifying Scientific Conferences!  I have to go, as I have to start thinking about the next Weekly Head Voices.

Weekly Head Voices #18: Refactor my dogfood.

Welcome all, to this, the 18th edition of the Weekly Head Voices, in which I discuss a number of issues that mostly have nothing specific to do with the 11th week of 2010, but which might or might not have crossed my mind during that time! Issues include good news on the EuroVis 2010 front, a new edition of the Head Voices Review featuring my completely unexpected stay in a 7 Tesla MRI scanner (as a test subject, of course)  and finally some nerdy backyard philosophy dealing with the well-known itch to Rewrite Everything From Scratch, Because What’s There Now Sucks.

First, because I have no other visual element for this week’s post, and  because I am, as you might have noticed, a method blogger, I present you with probably the best chatroulette.com improv I’ve ever seen so far. For those of you who have been completely asleep the past few weeks, chatroulette is a new site that’s been taking the interwebs by storm. The site pairs up random strangers for webcam chats. One is allowed to move to the next random stranger with the click of a buttom (resulting in the new English verb “to next” someone..). Random hilarity (and often perversity) ensues! Here’s that mostly SFW and brilliant piano improv:

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(The original video had to be pulled, after 4 million views, due to some YouTube issues. Merton, pianist, has posted this new version. Thanks to Francois for the heads-up!)

Back to business, we have just heard the great news that our two EuroVis 2010 submissions have been finally accepted for publication.  The articles are:

  1. S. Busking, C.P. Botha, and F.H. Post, “Dynamic Multi-View Exploration of Shape Spaces,” Computer Graphics Forum, 2010.
  2. P.R. Krekel, E.R. Valstar, J. de Groot, F.H. Post, R.G. Nelissen, and C.P. Botha, “Visual Analysis of Multi-Joint Kinematic Data,” Computer Graphics Forum, 2010.

Fantastic work you first authors you! Remember people: YOU HAVE TO CITE THESE SOON, AND YOU HAVE TO CITE THEM OFTEN! This also means that a number of us will be going to Bordeaux in June (I can imagine worse places to go to in June) to mingle with other scientists and to drink really good red wine.

That good news brings us to the influential WHV feature, the Head Voices Review! (My TPN is still working on the new jingle.  Hopefully it’ll be on time for our joint Vodka review feature.) In this edition, I’ll be reviewing the Philips 7 Tesla MRI scanner and the JBL Duet-200 computer speakers.

On Friday, I unexpectedly had the pleasure of trying out a state-of-the-art 7 Tesla Philips MRI scanner, as a test subject. I can report that the bore, although small, is quite comfortable. However, test subjects with claustrophobic tendencies should probably look elsewhere.  Scanning can be quite noisy, especially when a diffusion weighted imaging protocol is applied that involves scanning in 162 different gradient directions (to study the structural connectivity in my brain). However, the music that gets piped in between scanning sessions more than makes up. After scanning, it was scientifically confirmed that there is indeed a brain housed in my skull, an observation that pleasantly surprised me. Soon I hope to be able to post visualisations, made by one of our MedVis ninjas, of the structural connections in my brain.

All in all, if you have a few million euros lying around, this piece of kit is highly recommended.  To summarise:

  • Philips 7T MRI: AWESOME.

In a previous review, I was quite negative about the Logitech S3-30 speakers, for a large part due to the absolute mess of cables that it comes with. This past week I took delivery of the new JBL Duet-200 speakers I ordered, for the grand amount of 30 eurobucks, to replace it. The JBL is a single unit containing two speakers, something which might be seen as a drawback, but which I consider an advantage. In spite of its compact appearance, it packs quite a base and more than sufficient volume.  In addition, there are exactly two (2) cables: One for the power supply, and one for the audio. I can only hope that Logitech contracts JBL on their next PC speaker product design. My only (minor) gripe is that the JBL-supplied audio cable is only about 40cm long. All in all:

  • JBL Duet-200 at € 30 price-point: AWESOME.

MRI scanners and PC speakers: No product too big, no product too small for the Head Voices Review!

Finally, it’s time for some backyard philosophy.  This week, it’s a brief point of really nerdy philosophy, although I think the principles apply to some non-nerdy activities as well. Software developers, as well as many other engineering types, often reach a point during working on a project, when they have a hard-to-control urge to trash the whole thing and start from scratch.  There is usually a very strong belief that the project / software / product can be designed much better by starting from scratch.

It turns out that this is an insidious and mostly incorrect belief, for a large part due to all the knowledge present in the existing “ugly” product that will get thrown out. Engineers easily underestimate the importance of this knowledge. It turns out, much as we don’t like to hear this, that refactoring is, nine times out of ten, a far better answer than rewriting from scratch. Experienced developers know this, and are mostly able to suppress the rewrite from scratch itch.

Joel Spolsky wrote a really good essay on this phenomenon. Go read it!

Weekly Head Voices #14: My Week Was A Wormhole.

In this week’s post, documenting the 7th week of 2010, I wonder about perceived business, mention two of our most recent open source releases and give to you, my readers, two screencasts about the DRE, in addition probably highly effective in the treatment of insomnia.

Screenshot of the FoBVis system. This is just one of our many attempts to take over the world, subtly.

Just before bedtime on Monday, I had still managed to make a note in my special top-secret Weekly Head Voices journal.  I usually do this every day to make sure I don’t forget anything by the weekend, when I usually have some time to write these posts.  Thursday night’s entry simply says “WTF, where did my week go?!” — There had been no other entries since Monday. I’m still not quite sure why it felt that way, as my breakdown of activities is similar to that of the previous week: 2 hours of lecture preparation, 3 hours of lecturing, 15 hours of scheduled meetings and 20 tasks completed (one more than last week!!) across 10 projects. Perhaps those four extra hours of meetings don’t scale linearly in the amount of business they cause, due to the number of extra context switches that they bring. I have to add that a number of truly exciting projects are brewing, but I can’t say more about them until I can say more about them, if you know what I mean.

We (The Group, of course) recently released two new open source software projects:

  • FoBVis is a tool for the real-time acquisition and visualisation of human motion: Currently it supports the Flock-of-Birds electromagnetic acquisition system, we are currently working to integrate Optotrak optical tracking system. We should also shortly have a version of the DRE that can run the FoBVis on YOUR computer as well.
  • HistoVis is a client-server system for the visualisation of large collections of (registered) histological sections.

It’s all very exciting that more products of our research are entering the big bad outside world!  The FoBVis is already being actively used by the LUMC Laboratory for Motion Analysis (we hope that more labs will start using this soon), and HistoVis will soon go live from the visible-orbit.nl server. Of course these have both been released under the new BSD license, as the GPL sucks.

Screencasts: Video Performance Art of the Nerdily Inclined. That’s where one makes a recording of one’s computer screen whilst demonstrating some or other procedure, optionally narrated by oneself, and then proceeds to upload said recording (called a screencast) to YouTube or similar. See a previous post of mine for one possible (and free) way of doing this on Windows. This weekend I produced and uploaded two such pieces, both demonstrating aspects of the DeVIDE Runtime Environment, or DRE, that paradoxically do NOT involve DeVIDE itself. Especially the second is really soothing, one could even say mildly sleep-inducing.  I just say: (1) Try (2) it.

To conclude, I give you a track from the new Massive Attack album Heligoland, called Paradise Circus. It should make your brain sit and scratch its chin stubble, not unlike the usual dose of backyard philosophy:

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Weekly Head Voices #12: Ceci n’est pas une bibliothèque.

Welcome to the latest edition of the Weekly Head Voices, in which I briefly touch upon the, to my mind, mention-worthy events that took place within my field of observation during week 5 of the year 2010, and with which I too finally have an excuse to (ab)use the famous words of Magritte for my dubious ends. :)

WE INTERRUPT THIS PROGRAMME FOR THE FOLLOWING IMPORTANT ANNOUNCEMENT:

I’m officially not supposed to talk about this until the next edition of the Weekly Head Voices, but it’s too big and too cool to keep quiet about until then.  Google has just released Buzz, their location-based status / media updating system, and it’s fantastically cool.  I’ve just posted my first Buzz via Google Maps 4.0 on my E71 (I think I’m the third buzz in Delft EVAR).  Don’t know what Buzz is? Check this YouTube clip:

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YOU WILL NOW BE RETURNED TO YOUR NORMAL PROGRAMMING.

The reason for the title of this post is my Saturday visit to DOK, Delft’s unique library concept. It’s not really a library, but more of a fantastic place of gathering that coincidentally contains thousands of books, CDs, DVDs and, err, a coffee shop! They even have a number of sonic chairs that one can make use of to listen to music via the mounted Macs. This Saturday, live music by one of the artists who exhibited at the DOK.  I made you a short snippet:

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As even this short edition should end on a philosophical note, I’d like to conclude with an interesting discussion I had on whether the type of research we do in (medical) visualisation can be considered to be science. Very strictly speaking, the scientific method consists of observation, hypothesis forming and finally experimentation to prove or disprove the hypothesis. A large body of visualisation work is concerned with making stuff that solves hard problems, i.e. formulative research as opposed to the more traditional evaluative research. Although the question of whether making stuff that solves hard problems constitutes science is a complex discussion that deserves a whole year of blog posts, I am going to conclude with one possible and simple take on situation:

By taking this constructive approach we are, besides actually solving problems (a neat by-product, no?), discovering how to create effective visual representations of complex phenomena hidden in even more complex data. By doing this, we are in fact observing the supremely complex system consisting of the whole pipeline from data acquisition to insight, all the while experimenting with parameters (in the widest possible sense of the world) and thus confirming or disproving hypotheses concerning the nature of the pipeline and its various components. Together, these hypotheses make up the model that governs the effective extraction of insight from data via the human visual system.

Futuristic Betting at VisWeek 2009.

So I went to IEEE VisWeek 2009, and it was far more awesome and enjoyable than even my most optimistic expectations. Besides contributing to the tweetstorm (see #visweek) but not being able to liveblog due to higher priority activities, attending paper presentations and chatting with as many cool people as possible (much higher priority activities), this year I’ve also made a number of elaborate bets with a subset of said cool people concerning the future of our technology. If all goes according to plan, the bets’ll end up being visionary, if not, they might be slightly embarrassing and we’ll have a good laugh at VisWeek 2019.

Because these bets only realise in 10 or 20 years, I’ve told my betting partners that I would write it up on my blog so that we could check in that much time, and that they would then owe me copious amounts of beer. This also gives them the opportunity to check my wording for suitability, as we might have to cleave hairs when the time comes.

Bet #1: At VisWeek 2019, I and at least one other person will be wearing a HUD pretty much all the time, OR I will have at least one bionic eye.

Courtesy of Fraunhofer-Gesellschaft.

Courtesy of Fraunhofer-Gesellschaft.

I made this bet with the infamous Dr. Bob Laramee, proprietor of the 5-star webpage.  This came up in a conversation about having some form of non-intrusive display device always available with which things could be looked up, relatively unobtrusively, during for example a conversation.

I do expect that sometime within the next 10 years, HUDs (heads-up display) will be offered as an option with every new set of spectacles.  This is definitely not a push-over bet, but that makes it all the more exciting.

I’m not sure how the bionic eye clause slipped in there, honestly!

Bet #2: 19.5 years from now, there will be more cars with alternative propulsion systems than there are cars with fossil-fuel based internal combustion engines.

This one was made with Dr Helmut Doleisch, linked view data analysis guru and now CEO of SimVis (hey man, BUY THEIR SOFTWARE!).  He is concerned with all the vested interests in fossil-fuel combustion, whereas I think that 19.5 years is more than enough time to introduce non-fossil fuel based propulsion systems on the road, so much so that less than 50% of cars on the road will have need of fossil fuel.

Brazil with its 190 million inhabitants is an interesting example in this regard: A large number of their cars already run on either gasoline or sugarcane ethanol – clearly a great step in the direction of non-fossil fuel options.

Bet #3: In 2029, distributed conferences with tele-presence will be common.

In this case, the beer-donor is Dr Stefan Bruckner, master of all things volume visualisation and father of the VolumeShop software system.  My contention is that in 20 years, conferences where attendees take part via tele-presence systems, whatever they may be, will be common-place.

I’ve called one of the models I envision of this “clustered telepresence”, which would entail that groups of attendees would indeed gather physically, but that these remote clusters would be connected by advanced tele-presence systems, involving advanced displays (think very large, or perhaps even some form of mobile volumetric displays) and distributed and mobile sound.

During the discussion preceding the making of this bet, valid concerns were raised with regard to the efficacy of remote socialising, especially beer-drinking.  I agree that this is an issue of utmost importance, but still contend that technology and efficiency concerns will conspire to address this problem in a way that is at least good enough to fool, to a sufficient extent, all parties involved.