Tag Archives: visualisation

Futuristic Betting at VisWeek 2009.

So I went to IEEE VisWeek 2009, and it was far more awesome and enjoyable than even my most optimistic expectations. Besides contributing to the tweetstorm (see #visweek) but not being able to liveblog due to higher priority activities, attending paper presentations and chatting with as many cool people as possible (much higher priority activities), this year I’ve also made a number of elaborate bets with a subset of said cool people concerning the future of our technology. If all goes according to plan, the bets’ll end up being visionary, if not, they might be slightly embarrassing and we’ll have a good laugh at VisWeek 2019.

Because these bets only realise in 10 or 20 years, I’ve told my betting partners that I would write it up on my blog so that we could check in that much time, and that they would then owe me copious amounts of beer. This also gives them the opportunity to check my wording for suitability, as we might have to cleave hairs when the time comes.

Bet #1: At VisWeek 2019, I and at least one other person will be wearing a HUD pretty much all the time, OR I will have at least one bionic eye.

Courtesy of Fraunhofer-Gesellschaft.

Courtesy of Fraunhofer-Gesellschaft.

I made this bet with the infamous Dr. Bob Laramee, proprietor of the 5-star webpage.  This came up in a conversation about having some form of non-intrusive display device always available with which things could be looked up, relatively unobtrusively, during for example a conversation.

I do expect that sometime within the next 10 years, HUDs (heads-up display) will be offered as an option with every new set of spectacles.  This is definitely not a push-over bet, but that makes it all the more exciting.

I’m not sure how the bionic eye clause slipped in there, honestly!

Bet #2: 19.5 years from now, there will be more cars with alternative propulsion systems than there are cars with fossil-fuel based internal combustion engines.

This one was made with Dr Helmut Doleisch, linked view data analysis guru and now CEO of SimVis (hey man, BUY THEIR SOFTWARE!).  He is concerned with all the vested interests in fossil-fuel combustion, whereas I think that 19.5 years is more than enough time to introduce non-fossil fuel based propulsion systems on the road, so much so that less than 50% of cars on the road will have need of fossil fuel.

Brazil with its 190 million inhabitants is an interesting example in this regard: A large number of their cars already run on either gasoline or sugarcane ethanol – clearly a great step in the direction of non-fossil fuel options.

Bet #3: In 2029, distributed conferences with tele-presence will be common.

In this case, the beer-donor is Dr Stefan Bruckner, master of all things volume visualisation and father of the VolumeShop software system.  My contention is that in 20 years, conferences where attendees take part via tele-presence systems, whatever they may be, will be common-place.

I’ve called one of the models I envision of this “clustered telepresence”, which would entail that groups of attendees would indeed gather physically, but that these remote clusters would be connected by advanced tele-presence systems, involving advanced displays (think very large, or perhaps even some form of mobile volumetric displays) and distributed and mobile sound.

During the discussion preceding the making of this bet, valid concerns were raised with regard to the efficacy of remote socialising, especially beer-drinking.  I agree that this is an issue of utmost importance, but still contend that technology and efficiency concerns will conspire to address this problem in a way that is at least good enough to fool, to a sufficient extent, all parties involved.

Weekly Head Voices #5: Google Docs, Bad Netbook Karma, Cold does not cause cold.

It’s been a terribly quiet week blog-wise, but I did make that promise four weeks ago, and, seeing that I want to be a columnist when I grow up (hint hint employers of columnists) and those guys and girls simply HAVE to think up something interesting every single week, I too am going to do my best to add sweetness to the shortness that you see before you.

Speaking of shortness, I did get some off-blog (yes, face-to-face!) feedback on the previous edition of the WHV. Said (highly appreciated) feedback concerned the length of these posts, more specifically, that there was too much of it. It’s important to remember that I in fact do write these things with the chronically time-challenged in mind. One of the measures I take is to bold the most important themes in each paragraph, so that one can easily skip on to the next paragraph if the mentioned theme does not take one’s fancy. This week, I’m going even further by employing section headings! As always, please feel free to skip paragraphs and sections.

Before jumping in, I give you the traditional WHV photo, this time of my little Weber doing its thing (thanks to some crucial material supplied by my friendly neighbour) on the most brilliant of all South African celebrations: National Braai day!

My humble little Weber on NBD 2009.

My humble little Weber on NBD 2009.

Geeky Google Docs love affair

Google Docs is Google’s fantastic attempt (well, it was initially developed by Writely, which was soon assimilated by and has since been happily functioning inside of The Google Supermind) at an office suite. The whole thing, including Documents, Spreadsheets, and Presentations, runs in your web browser. This means that you always have access to your stuff from anywhere, and you never have to install any extra software. With the offline functionality, you can continue working even without an internet connection.

This was already pretty neat, but then they had to go and make it even neater. In my line of business, one of the coolest features is the fact that you can concurrently edit the same document with any number of collaborators. I’ve written research proposals together with colleagues before, where at a number of occasions we were actually editing the same paragraph of text from two different cities, and Docs didn’t break a sweat merging our edits in real-time. This functionality also eliminates the very irritating “Could you send me the latest version of the proposal” emails, the subsequent waiting and then the infuriating expired time window when the latest version finally arrives in the email.

A recent feature which is admittedly less impressive to the public at large, but made my geek heart miss several beats, was the built-in equation editor. Imagine my surprise when I tried this out for the first time and realised that it is in fact a real-time LaTeX math typesetter: You type your incredibly complex formula in standard LaTeX, and Google Docs shows the typeset math updated in real-time. This is even useful if you’re NOT using Google Docs but just want to fine-tune the formulas in your LaTeX article.  Check the screenshot below:

Screenshot of Google Docs equation editor.

Screenshot of Google Docs equation editor.

90% of MS Office users probably don’t use more than 10% of its functionality. Google Docs covers this 10% more than adequately, but without the complexity, the platform lock-in and the cost. Next time you’re considering emailing someone a Word document or Powerpoint, have a look at Google Docs first!

Netbook Bad Karma

On an extra partition, my netbook (Asus 1005HA-H, the computer I’m currently in love with) has the absolute latest development version of the Ubuntu Karmic Koala (9.10 – will be released at the end of October) Netbook Remix. Linux distributions, and especially Ubuntu, have been making great progress recently on state of the art hardware. On this netbook, suspend to ram for example works out of the box, which is quite an achievement for Linux-kind. However, whereas battery life under the bundled Windows with the Asus Super Hybrid Engine (don’t laugh, to me it sounds like some knid of giant fighting robot power source) is an astounding 9+ hours, under Linux it’s a quite disappointing 4 or 5 hours. One very obvious factor is the CPU running at 1GHz at idle under Linux and 850MHz at idle under Windows.

Even installing and configuring the latest eeepc acpi utilities, including kernel module, from the testing repository at StatUX http://www.statux.org/content?page=repo, although enabling bunches of hotkeys, didn’t solve the battery problem. The CPU was still running at 1GHz.

I’m curious to see what the case will be at Karmic release, preferably with the stock Ubuntu Netbook Remix and not too much user fiddling. I’m considering writing a short review at that time, hopefully less critical than my previous attempt with Ubuntu Feisty beta (7.04) on my HP laptop.

Brand new Visual Data Analysis lecture block

For the past 4 years, I have been taking care of the Medical Visualisation parts (2 lecture blocks) of the TU Delft master-level Data Visualisation course (IN4086). Since the beginning of this year, I also give my very own dedicated 5 ECTS Medical Visualisation course (IN4307), which I have designed with the sole purpose of producing MedVis NINJAS. I take great joy in corrupting promising young minds with my special brand of evil science. :)

In a very recent development, it seems that I will now also be taking care of the Visual Data Analysis block of the general Data Visualisation course. I somehow blurted this out during a recent meeting, and now have the privilege of designing this one from scratch too.

This is quite interesting, because visual data analysis, or visual analytics as it’s sometimes called (urgh), is primarily associated with Information Visualisation, and being a MedVis fanatic I’m supposed to be a Scientific Visualisation guy. To cut a long story short, InfoVis and SciVis are two sub-fields in the broader field of Visualisation, but the communities behind them might as well come from different planets, in spite of the best efforts of some of my colleagues to unify everything. In any case, it turns out that we (when I say “we” I mean Jorik) have been secretly publishing suspiciously infovis-friendly articles the past few years. Look:

I find this a very interesting and gratifying development. An increasing number of my research collaborations in the medical research field are also benefiting from visual data analysis techniques. Keeping in mind the clichéd but no less real data explosion, we, as visualisation people, can greatly increase our value to the client. The forthcoming Visual Data Analysis lecture block I’m designing is just one step in the evolution of our science.

The End, my friend, also of your common cold misconceptions.

Pressing Ctrl-Shift-C in this Google Doc draft (how’s that for subtle product placement?), I can see that I’ve once again passed the 1000 word mark (1200 to be more precise).

Whoops.

I had even more planned, but instead I’ll conclude with a hopefully useful snippet of information, especially in the light of the coming winter. Many people I run into still somehow believe that there’s a causal relationship between being cold, as in going outside in cold weather, and getting a cold, as in sneezing and having a running nose. Well, I’m here to tell you that it’s an age-old myth. A myth I say! See this quote from the Wikipedia article on the common cold (emphasis mine):

An ancient belief still common today claims that a cold can be “caught” by prolonged exposure to cold weather such as rain or winter conditions, which is where the disease got its name.[9] Although common colds are seasonal, with more occurring during winter, experiments so far have failed to produce evidence that short-term exposure to cold weather or direct chilling increases susceptibility to infection, implying that the seasonal variation is instead due to a change in behaviors such as increased time spent indoors at close proximity to others.[6][10][11][12][13]

Just to ram that point home: Going outside in the cold, or being exposed to cold weather or direct chilling, very probably does not increase your chances of catching the common cold! Similar to this is the work on influenza. It turns out that there’s a link between the flu and absolute humidity: The lower the humidity, the higher the chance of getting the flu. It’s quite probable that you catch the flu virus not from going outside in winter, but from staying inside your heated and hence slightly drier home.  Chalk one up for all the kids getting told, unfairly and without scientific basis, to dress up before going out or risk getting ill.

On that rebellious note, have a super duper week!  (… and please do your thing in the comments below …)

Weekly Head Voices #3: Powerless meat Zen, Xi leaves, NFBI, Motek

HI KIDS!!

You thought I’d forgotten all about you, dintcha?  Nope, not that easily.

Because this edition of the Weekly Head Voices is the most unorganised ever, the trick of bolding the most representative words in each paragraph simply won’t fly.  So instead I’ll just highlight some random words, and you can pretend that they actually mean something.  Think of it as a post-modernistic exercise in missing the point.  I’ll try and be more organised next week.

The most relevant image I could find: The overfull bicycle parking behind Delft station on Thursday just after noon, right before leaving for the NFBI meeting in Leiden.  Turns out that in the Netherlands, there's on average slightly more than one bicycle for each and every inhabitant.

The most post-relevant image I could find: The overfull bicycle parking behind Delft station on Thursday just after noon, right before leaving for the NFBI meeting in Leiden (see later in this post). Turns out that in the Netherlands, there's on average slightly more than one bicycle for each and every inhabitant.

The past week, #37 of the year 2009, started really quietly with only two regular, but interesting, progress meetings on the Monday.  On Tuesday, things started heating up with another two meetings (nice ones) and a 2-hour long Medical Visualisation demo to a friendly gentleman from VisibleTV, a production company that has been contracted by my employer to put together an 8-minute video showcasing all medically-oriented research at the TU.  Due to the chaos of trying to book affordable plane tickets to Atlantic City that don’t involve 3 days of transit via donkey and a stint on the back of a livestock truck, I found myself in a slightly ruffled state by the end of the day.

I detest ending my day in a ruffled state, even if it is an ever so slight ruffle.

However, fate (we’ll talk about that much later) had conspired to return me forcibly to my preferred Zen state via three powerful avenues: I had to go BBQ at home with family and an extremely welcome guest, and, to make sure that the BBQ had the desired effect, the whole of Westland (my region) lost electricity from right about when I started the fire until midnight.  Just to make sure that the message hit home, the weather was perfect.  Picture this: Darkened houses, perfect dusk, balmy weather, superb quiet except for people all keeping each other company outside.  Complete Zen.

The next day was predictably a winner.  Now Zen-powered, I managed to kill off a scarily big chunk of my over-engineered todo list, in spite of 5 meetings and Xi’s farewell occasion.  Yes, I’m afraid that after a year of visiting our group, doing great work and generally integrating just perfectly, Xi has gone back to Beijing.  We are definitely going to miss her.

The highlight of Thursday was the bi-annual meeting of the Netherlands Forum for Biomedical Imaging, or the NFBI, an acronym that is in fact a significant improvement over NVPHBV (man, what an inside joke).  The NFBI is where all Dutch research groups that do something in biomedical imaging get together to discuss that something.  The meetings usually consist of a number of research presentations.  On Thursday, these were mostly given by post-doctoral researchers.  One thing that struck me was that although the content was of a consistently high quality, the presentations themselves sometimes were amenable to improvement.  I understand that the biggest challenge is actually doing the research, but the value of presenting that research in an accessible and entertaining way should not be underestimated.

My personal favourite, and probably not amenable to all that much improvement :), was the presentation by Dr Bram Platel of his group’s work on Deep Brain Stimulation (DBS) of the sub-thalamic nucleus (STN).  Turns out that by stimulating this peanut-sized part of the basal ganglia system (by sticking an electrode deep into the brain, hence the name), you can for example remedy some of the motoric symptoms of Parkinson’s disease.  The problem is that if you stimulate the non-motor parts of the STN, this can result in acute depression.  Bram and his group are trying to solve this problem by figuring out the patient-specific layout of the STN via high angular resolution diffusion imaging (HARDI), an MRI-based imaging technique that is able to show structural connectivity in the brain.  Man, I thought that that was going to be a nice and short explanation…  In sharp contrast to my paraphrased version, the presentation entertained, edified and engaged.  To compensate, I alliterate.

Friday morning started with two meetings in Leiden: One concerning starting up new neuro-imaging research together with the LUMC and an extremely capable M.Sc. student, and the other concerning productising existing research.  The former is still in stealth mode, the latter involves putting the motion capture and visualisation software developed by two groups of bachelor students (and ourselves) into production use, first in the LUMC Motion Laboratory, and finally in other labs as open source.

The work week was concluded with a fantastic visit at Motek Medical in Amsterdam, together with Frans, motion scientist extraordinaire, who was the primary guest and graciously invited us along, and Peter, surgical planning guru and motion visualiser of note.  Motek makes and advises on a number of different motion platforms (think for example a 2m conveyor belt on top of a flight-simulator-like collection of hydraulics), matching giant screens and various motion capture setups that enable all kinds of virtual reality and motion measurement magic.  The embedded YouTube clip below shows a demo of their HBM system, that’s able to estimate muscle activation from motion capture in real time:

YouTube Preview Image

At the core of all their products is the CAREN software system.  This is an impressive data-flow framework with a visual programming front-end that enables real-time communication with all kinds of sensors and actuators, from humble rotation sensor all the way up to multi-camera optical tracking and industrial-grade hydraulics.  Our gracious hosts, Erwin Albers and Thomas Geijtenbeek, demonstrated by linking up a fresh rotation sensor with collision detection in all of 2 minutes.

So, that was it for this week boys and girls!  I was still planning a short bit on the evolutionary basis of music and dance (seems to be an interesting mystery), but the current post already seems to have outgrown my intentions.   See you in a week, most probably with a much smaller edition of the WHV (Weekly Head Voices man!).  I’m planning a quiet week, at least in terms of bloggable highlights. :)

Weekly Head Voices for Week 36

Dear readers,

The time has come for the second installment of the exciting new Weekly Head Voices feature!  My PR people tell me that this is a roaring success and that I am rapidly on my way to becoming an A-List blogger. My therapist tells me that I should find a good psychiatrist.

Before starting, I’d like to show the following photo (will get back to it later):

The_Tropicana_400

In order to facilitate your reading experience, I have bolded in each paragraph some words that represent, with differing levels of effectiveness, the theme of that paragraph.  This way, you can easily skip ahead, keeping in mind that you’re probably skipping over some truly inspiring writing.

During the past week, I had 11 face-to-face meetings with students, colleagues and collaborators.  Apart from these meetings, I presented the MedVis group’s research to a group of new postgrads on Tuesday and hosted, together with colleagues from the LUMC, a visit by Tornier on Friday.  It turns out that this job does in fact require a seemingly paradoxical mix of computer nerd and social butterfly.

On Monday, I acted as external member in the M.Sc. opposition of a thesis titled “In vivo identification of short range stiffness in the human wrist” – the student managed to figure out internal wrist muscle characteristics by applying external angular displacement and measuring effective torque.  Reviewing the work was an interesting experience, as biomechanical modelling is not one of my research foci.  All in all, very good work, although it did remind me again of why one should not typeset longer documents with a sans serif font.

The highlight of the week is surely Gerwin de Haan‘s PhD defense.  An exemplary opposition, with solid attacks by the committee (6 full professors and 1 associate professor) and great defensive moves by the intrepid candidate, made for an entertaining morning.  The day was concluded with a celebratory party during which the candidate, besides consuming amounts of beer fit for a fresh doctor, received congratulatory loot fit for a PS3 and Rockband-addicted pirate!

In other nerd-worthy news: I am now the proud owner of an Asus 1005HA-H Netbook, rated with 10.5 hours of battery life.  I can confirm that the battery life is indeed awe-inspiring, also in practice.   The little beast easily lasts a whole day, and then some.  The only issue so far has been choosing a good encryption solution.  The little Atom N280 doesn’t manage much more than 30MB/s in the Truecrypt encryption benchmark, and about 38MB/s even with the optimised Diskcryptor implementation.  The Windows XP Home that this netbook ships with of course does not support EFS.  In the end, I went for Truecrypt (I use it everywhere else) and just copied over the 25G encrypted container from my Big Laptop.

Getting back to the photo above:  Boys and girls, thanks to my generous leader and the TU Delft, I get to join said generous leader and Jorik on a trip to IEEE Visualization 2009 in Atlantic City!  For the socially more well-adjusted readers, this is like Visualisation Nerd Heaven: A whole week of mingling with technically creative colleagues, discussing the latest visualisation tidbits, following paper presentations and Sleeping Much Less(tm).  Brilliant!

Eurovis 2009

On Friday I returned, by jet-powered flying device, from Yet Another Visit To Berlin.  :)  Berlin still exudes cool like nothing else, and I got to spend my time there in the company of more than 190 other Visualisation people, many of whom have become friends over the past years.  The three days were filled with presentations, but more importantly (sorry presenters!) good conversations, new friends (contacts?) and not too much sleep.  This was, without a doubt, my best Eurovis conference so far!

The conference was held in the historically and scientifically significant Harnack House, located in the academia-dominated Dahlem district of Berlin.  For a time, the Harnack House was the home of brilliant German scientists such as Einstein, the guy who invented the dish-washer (as you all know).  The unique setting definitely contributed to the particularly unique feel of this year’s event.

Stef did a sterling job presenting our paper on the scientific comparison of Smurfs (will add link to paper later):

stef_smurfs

In spite of the importance of Smurf comparison, the best paper award was awarded to our friends from Swansea for their work on the Visualisation of Sensor Data from Animal Movement!  Remember to keep an eye out for our soon-to-appear InfoVis 2009 paper on the same topic, in cooperation with them.

Other papers / presentations that somehow stuck with me are (this is mostly due to my medvis bias and is not any reflection on the quality of the papers I do NOT list):

  • Instant Volume Visualization using Maximum Intensity Difference Accumulation by Bruckner and Gröller (Vienna): By a continuous combination of DVR and MIP, this technique overcomes problems of both techniques.  Minimal futzing with transfer functions, better depth than MIP, 35% improvement!
  • Map Displays for the Analysis of Scalar Data on Cerebral Aneurysm Surfaces (no link available yet) by Neugebauer, Gasteiger, Beuing, Diehl, Skalej and Preim (Magdeburg): This is a great example of combining 3D with 2D to effectively visually represent complex simulation data.  Also, much like our shoulder work, this is a text book example of the medical visualisation pipeline (acquisition, image processing, simulation / modelling, visualisation / interaction, evaluation).

The capstone on Friday by Helmut Grubmüller on Watching Biomolecular Nanomachines at Work was inspiring.  Besides the fact that he seems to publish papers with beautiful visualisations in Science every second week, he’s a fantastic speaker who was able to impress on us his wonder at these almost unfathomably tiny protein-component machines, with their rotating axes and all.  Here’s another bad mobile phone photo of the man in action:

grubmueller

P.S. Of course our paper wasn’t really on Smurf comparison.

P.P.S. Petra Isenberg (winner of the 3d best paper award!) and Christopher Collins made a really cool and detailed write-up of Eurovis 2009 (slightly infovis-biased) at Information Aesthetics.